Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 AC007326.2-201ENST00000624224 7579 ntBASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 AC120024.1-201ENST00000562672 995 ntBASIC11.57□□□□□ -0.56
LINC00643Q86TS7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 AC007950.2-201ENST00000615045 2347 ntBASIC11.57□□□□□ -0.56
LINC00643Q86TS7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
LINC00643Q86TS7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms