Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL7A1Q02388 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL7A1Q02388 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL7A1Q02388 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
COL7A1Q02388 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.21□□□□□ -0.3
COL7A1Q02388 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
COL7A1Q02388 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.21□□□□□ -0.3
COL7A1Q02388 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 AL357033.4-201ENST00000617703 1807 ntBASIC13.21□□□□□ -0.3
COL7A1Q02388 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
COL7A1Q02388 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL7A1Q02388 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.2□□□□□ -0.3
COL7A1Q02388 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.2□□□□□ -0.3
COL7A1Q02388 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.2□□□□□ -0.3
COL7A1Q02388 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.2□□□□□ -0.3
COL7A1Q02388 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 INTS4P1-201ENST00000438455 1935 ntBASIC13.2□□□□□ -0.3
COL7A1Q02388 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.2□□□□□ -0.3
COL7A1Q02388 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 KRT18P27-201ENST00000427733 1299 ntBASIC13.2□□□□□ -0.3
COL7A1Q02388 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.2□□□□□ -0.3
COL7A1Q02388 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL7A1Q02388 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL7A1Q02388 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 RCN1P2-201ENST00000398357 915 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.19□□□□□ -0.3
COL7A1Q02388 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 RNA5SP416-201ENST00000516838 111 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.19□□□□□ -0.3
COL7A1Q02388 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 Z82202.1-201ENST00000623446 1880 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
COL7A1Q02388 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 AC239800.4-201ENST00000603712 296 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL7A1Q02388 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL7A1Q02388 AC012645.4-201ENST00000610691 1061 ntBASIC13.19□□□□□ -0.3
COL7A1Q02388 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL7A1Q02388 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.18□□□□□ -0.3
COL7A1Q02388 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC13.18□□□□□ -0.3
COL7A1Q02388 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms