Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 SDHAP2-201ENST00000455183 2001 ntBASIC19.25■□□□□ 0.67
PTPN9P43378 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PTPN9P43378 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.25■□□□□ 0.67
PTPN9P43378 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PTPN9P43378 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.25■□□□□ 0.67
PTPN9P43378 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN9P43378 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.25■□□□□ 0.67
PTPN9P43378 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PTPN9P43378 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN9P43378 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PTPN9P43378 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN9P43378 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.24■□□□□ 0.67
PTPN9P43378 ATP5G1P1-201ENST00000448724 379 ntBASIC19.24■□□□□ 0.67
PTPN9P43378 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.24■□□□□ 0.67
PTPN9P43378 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.24■□□□□ 0.67
PTPN9P43378 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN9P43378 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PTPN9P43378 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN9P43378 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN9P43378 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PTPN9P43378 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PTPN9P43378 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN9P43378 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN9P43378 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN9P43378 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN9P43378 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.23■□□□□ 0.67
PTPN9P43378 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTPN9P43378 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.22■□□□□ 0.67
PTPN9P43378 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.22■□□□□ 0.67
PTPN9P43378 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
PTPN9P43378 AC005521.1-201ENST00000393351 872 ntBASIC19.22■□□□□ 0.67
PTPN9P43378 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.22■□□□□ 0.67
PTPN9P43378 MIR3917-201ENST00000580971 93 ntBASIC19.22■□□□□ 0.67
PTPN9P43378 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 AC135050.7-201ENST00000624508 2218 ntBASIC19.22■□□□□ 0.67
PTPN9P43378 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
PTPN9P43378 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PTPN9P43378 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTPN9P43378 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
PTPN9P43378 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.21■□□□□ 0.67
PTPN9P43378 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PTPN9P43378 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.21■□□□□ 0.67
PTPN9P43378 COX11P1-201ENST00000489116 835 ntBASIC19.21■□□□□ 0.67
PTPN9P43378 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.21■□□□□ 0.67
PTPN9P43378 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 AL031432.5-201ENST00000641059 760 ntBASIC19.21■□□□□ 0.67
PTPN9P43378 AC092865.7-201ENST00000641832 219 ntBASIC19.21■□□□□ 0.67
PTPN9P43378 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms