Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
SHMT2P34897 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.13■□□□□ 0.49
SHMT2P34897 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.13■□□□□ 0.49
SHMT2P34897 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHMT2P34897 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.13■□□□□ 0.49
SHMT2P34897 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHMT2P34897 AC135050.7-201ENST00000624508 2218 ntBASIC18.13■□□□□ 0.49
SHMT2P34897 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.12■□□□□ 0.49
SHMT2P34897 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.12■□□□□ 0.49
SHMT2P34897 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.12■□□□□ 0.49
SHMT2P34897 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SHMT2P34897 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.12■□□□□ 0.49
SHMT2P34897 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.12■□□□□ 0.49
SHMT2P34897 AC140113.3-201ENST00000605663 199 ntBASIC18.12■□□□□ 0.49
SHMT2P34897 AC006011.2-201ENST00000621313 1158 ntBASIC18.12■□□□□ 0.49
SHMT2P34897 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.12■□□□□ 0.49
SHMT2P34897 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHMT2P34897 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.12■□□□□ 0.49
SHMT2P34897 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SHMT2P34897 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHMT2P34897 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHMT2P34897 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SHMT2P34897 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.11■□□□□ 0.49
SHMT2P34897 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
SHMT2P34897 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.11■□□□□ 0.49
SHMT2P34897 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.11■□□□□ 0.49
SHMT2P34897 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
SHMT2P34897 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 AC139887.4-201ENST00000607877 719 ntBASIC18.11■□□□□ 0.49
SHMT2P34897 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
SHMT2P34897 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHMT2P34897 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHMT2P34897 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHMT2P34897 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.1■□□□□ 0.49
SHMT2P34897 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SHMT2P34897 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.1■□□□□ 0.49
SHMT2P34897 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SHMT2P34897 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.1■□□□□ 0.49
SHMT2P34897 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHMT2P34897 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 MIR564-202ENST00000385049 94 ntBASIC18.1■□□□□ 0.49
SHMT2P34897 AK4P3-201ENST00000418260 669 ntBASIC18.1■□□□□ 0.49
SHMT2P34897 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.1■□□□□ 0.49
SHMT2P34897 AC117947.1-201ENST00000427448 529 ntBASIC18.1■□□□□ 0.49
SHMT2P34897 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.1■□□□□ 0.49
SHMT2P34897 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.1■□□□□ 0.49
SHMT2P34897 YBX1P2-201ENST00000489612 999 ntBASIC18.1■□□□□ 0.49
SHMT2P34897 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.1■□□□□ 0.49
SHMT2P34897 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHMT2P34897 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms