Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.16■□□□□ 0.82
RFX1P22670 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.16■□□□□ 0.82
RFX1P22670 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.16■□□□□ 0.82
RFX1P22670 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
RFX1P22670 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 AC104581.1-202ENST00000635932 2618 ntBASIC20.16■□□□□ 0.82
RFX1P22670 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.16■□□□□ 0.82
RFX1P22670 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
RFX1P22670 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX1P22670 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX1P22670 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RFX1P22670 TSPY5P-201ENST00000426936 936 ntBASIC20.15■□□□□ 0.82
RFX1P22670 MFAP1P1-201ENST00000442257 1255 ntBASIC20.15■□□□□ 0.82
RFX1P22670 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.15■□□□□ 0.82
RFX1P22670 COX11P1-201ENST00000489116 835 ntBASIC20.15■□□□□ 0.82
RFX1P22670 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 KRT18P41-201ENST00000518924 1277 ntBASIC20.15■□□□□ 0.82
RFX1P22670 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.15■□□□□ 0.82
RFX1P22670 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX1P22670 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.15■□□□□ 0.82
RFX1P22670 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 AL162741.1-201ENST00000565563 1558 ntBASIC20.15■□□□□ 0.82
RFX1P22670 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.15■□□□□ 0.82
RFX1P22670 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.15■□□□□ 0.82
RFX1P22670 BICD1-207ENST00000551848 1962 ntBASIC20.15■□□□□ 0.82
RFX1P22670 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX1P22670 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX1P22670 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX1P22670 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RFX1P22670 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RFX1P22670 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.14■□□□□ 0.82
RFX1P22670 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX1P22670 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.14■□□□□ 0.81
RFX1P22670 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
RFX1P22670 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX1P22670 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFX1P22670 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.14■□□□□ 0.81
RFX1P22670 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX1P22670 INGX-201ENST00000359239 846 ntBASIC20.14■□□□□ 0.81
RFX1P22670 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 YBX1P2-201ENST00000489612 999 ntBASIC20.14■□□□□ 0.81
RFX1P22670 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 NEFHP1-201ENST00000412845 2629 ntBASIC20.14■□□□□ 0.81
RFX1P22670 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX1P22670 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.14■□□□□ 0.81
RFX1P22670 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 IER3-202ENST00000376377 1350 ntBASIC20.13■□□□□ 0.81
RFX1P22670 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 AC026396.1-201ENST00000419388 421 ntBASIC20.13■□□□□ 0.81
RFX1P22670 PCED1CP-201ENST00000419887 785 ntBASIC20.13■□□□□ 0.81
RFX1P22670 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 AC126763.1-201ENST00000552015 2118 ntBASIC20.13■□□□□ 0.81
RFX1P22670 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX1P22670 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX1P22670 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RFX1P22670 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX1P22670 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX1P22670 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RFX1P22670 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX1P22670 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX1P22670 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms