Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.09■□□□□ 0.65
VCANP13611 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.09■□□□□ 0.65
VCANP13611 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VCANP13611 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.09■□□□□ 0.65
VCANP13611 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
VCANP13611 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 INTS4P1-201ENST00000438455 1935 ntBASIC19.09■□□□□ 0.65
VCANP13611 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.09■□□□□ 0.65
VCANP13611 TSEN15P1-201ENST00000423257 515 ntBASIC19.09■□□□□ 0.65
VCANP13611 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.09■□□□□ 0.65
VCANP13611 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.09■□□□□ 0.65
VCANP13611 AP005018.1-201ENST00000525475 301 ntBASIC19.09■□□□□ 0.65
VCANP13611 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.09■□□□□ 0.65
VCANP13611 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.09■□□□□ 0.65
VCANP13611 AP000867.4-201ENST00000641616 219 ntBASIC19.09■□□□□ 0.65
VCANP13611 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCANP13611 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCANP13611 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCANP13611 AC064836.3-201ENST00000607928 673 ntBASIC19.08■□□□□ 0.65
VCANP13611 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.08■□□□□ 0.65
VCANP13611 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
VCANP13611 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.08■□□□□ 0.65
VCANP13611 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCANP13611 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.08■□□□□ 0.64
VCANP13611 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.08■□□□□ 0.64
VCANP13611 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.08■□□□□ 0.64
VCANP13611 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 OR7E14P-202ENST00000530490 1290 ntBASIC19.08■□□□□ 0.64
VCANP13611 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.08■□□□□ 0.64
VCANP13611 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.08■□□□□ 0.64
VCANP13611 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 AP005212.1-201ENST00000581547 1997 ntBASIC19.08■□□□□ 0.64
VCANP13611 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCANP13611 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VCANP13611 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 AC069262.1-201ENST00000539058 672 ntBASIC19.07■□□□□ 0.64
VCANP13611 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
VCANP13611 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 AL353692.3-201ENST00000407031 1396 ntBASIC19.07■□□□□ 0.64
VCANP13611 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.07■□□□□ 0.64
VCANP13611 AC093520.2-201ENST00000561830 333 ntBASIC19.07■□□□□ 0.64
VCANP13611 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCANP13611 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VCANP13611 AP002414.1-201ENST00000391405 1147 ntBASIC19.07■□□□□ 0.64
VCANP13611 RCN1P2-201ENST00000398357 915 ntBASIC19.07■□□□□ 0.64
VCANP13611 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VCANP13611 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.06■□□□□ 0.64
VCANP13611 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VCANP13611 MRPL20P1-201ENST00000400819 433 ntBASIC19.06■□□□□ 0.64
VCANP13611 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.06■□□□□ 0.64
VCANP13611 ELK2BP-201ENST00000415014 1224 ntBASIC19.06■□□□□ 0.64
VCANP13611 PDPK2P-202ENST00000562415 1191 ntBASIC19.06■□□□□ 0.64
VCANP13611 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.06■□□□□ 0.64
VCANP13611 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCANP13611 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
VCANP13611 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.06■□□□□ 0.64
VCANP13611 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.06■□□□□ 0.64
VCANP13611 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.06■□□□□ 0.64
VCANP13611 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms