Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SDC3O75056 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SDC3O75056 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SDC3O75056 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SDC3O75056 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SDC3O75056 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.08■□□□□ 0.49
SDC3O75056 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.08■□□□□ 0.48
SDC3O75056 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
SDC3O75056 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SDC3O75056 IGHGP-201ENST00000390555 1178 ntBASIC18.08■□□□□ 0.48
SDC3O75056 AP000347.1-202ENST00000435868 847 ntBASIC18.08■□□□□ 0.48
SDC3O75056 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.08■□□□□ 0.48
SDC3O75056 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.08■□□□□ 0.48
SDC3O75056 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.08■□□□□ 0.48
SDC3O75056 AC099336.1-202ENST00000602961 463 ntBASIC18.08■□□□□ 0.48
SDC3O75056 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.08■□□□□ 0.48
SDC3O75056 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SDC3O75056 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SDC3O75056 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDC3O75056 AL032819.2-201ENST00000624543 2162 ntBASIC18.08■□□□□ 0.48
SDC3O75056 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.08■□□□□ 0.48
SDC3O75056 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SDC3O75056 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 Z98044.1-201ENST00000632503 1764 ntBASIC18.07■□□□□ 0.48
SDC3O75056 AC233702.3-201ENST00000578656 1387 ntBASIC18.07■□□□□ 0.48
SDC3O75056 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.07■□□□□ 0.48
SDC3O75056 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SDC3O75056 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.07■□□□□ 0.48
SDC3O75056 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.07■□□□□ 0.48
SDC3O75056 AC024563.2-201ENST00000603282 481 ntBASIC18.07■□□□□ 0.48
SDC3O75056 AL592071.1-201ENST00000611956 408 ntBASIC18.07■□□□□ 0.48
SDC3O75056 AC124864.1-201ENST00000623408 392 ntBASIC18.07■□□□□ 0.48
SDC3O75056 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
SDC3O75056 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.07■□□□□ 0.48
SDC3O75056 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.07■□□□□ 0.48
SDC3O75056 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDC3O75056 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.07■□□□□ 0.48
SDC3O75056 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SDC3O75056 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.06■□□□□ 0.48
SDC3O75056 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 MIR3180-4-201ENST00000582223 153 ntBASIC18.06■□□□□ 0.48
SDC3O75056 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SDC3O75056 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.06■□□□□ 0.48
SDC3O75056 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 AL357033.4-201ENST00000617703 1807 ntBASIC18.06■□□□□ 0.48
SDC3O75056 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SDC3O75056 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SDC3O75056 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDC3O75056 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SDC3O75056 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.05■□□□□ 0.48
SDC3O75056 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SDC3O75056 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SDC3O75056 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.05■□□□□ 0.48
SDC3O75056 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.05■□□□□ 0.48
SDC3O75056 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.05■□□□□ 0.48
SDC3O75056 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms