Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 YBX1P5-201ENST00000509441 847 ntBASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 ABCD1P5-201ENST00000445663 754 ntBASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 AJ011932.1-201ENST00000621707 465 ntBASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A6A6NMZ7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 SNHG9-202ENST00000564014 471 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AC034236.2-201ENST00000606662 1610 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 LINC00565-201ENST00000562710 2331 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AL162377.1-201ENST00000618844 1793 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 PRSS29P-201ENST00000440800 595 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 BCRP1-201ENST00000444246 691 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AC105339.3-201ENST00000560043 636 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AL035252.4-201ENST00000624174 288 ntBASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A6A6NMZ7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 AC005829.1-201ENST00000570002 483 ntBASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 AL356309.3-201ENST00000624132 1934 ntBASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 TP73-AS1-210ENST00000637775 1455 ntBASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A6A6NMZ7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 MIR1199-201ENST00000621445 119 ntBASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 AC079834.2-201ENST00000609776 1949 ntBASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms