Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LRRC53A6NM62 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
LRRC53A6NM62 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 REXO1L9P-201ENST00000604264 2108 ntBASIC19.98■□□□□ 0.79
LRRC53A6NM62 ITM2C-210ENST00000620962 501 ntBASIC19.98■□□□□ 0.79
LRRC53A6NM62 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.98■□□□□ 0.79
LRRC53A6NM62 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC53A6NM62 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
LRRC53A6NM62 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 MIR564-202ENST00000385049 94 ntBASIC19.97■□□□□ 0.79
LRRC53A6NM62 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 FAM201B-201ENST00000458407 597 ntBASIC19.97■□□□□ 0.79
LRRC53A6NM62 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LRRC53A6NM62 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC53A6NM62 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 AC099343.3-201ENST00000605834 2503 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 KRT18P29-201ENST00000397031 1267 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 MFAP1P1-201ENST00000442257 1255 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 MCCD1P1-208ENST00000445732 328 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 TSPY20P-201ENST00000450910 630 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 SLC25A1P4-201ENST00000567977 778 ntBASIC19.96■□□□□ 0.79
LRRC53A6NM62 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.96■□□□□ 0.79
LRRC53A6NM62 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC53A6NM62 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 AC138028.4-201ENST00000564984 1845 ntBASIC19.95■□□□□ 0.78
LRRC53A6NM62 AL135905.2-201ENST00000584934 1404 ntBASIC19.95■□□□□ 0.78
LRRC53A6NM62 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 AC116562.2-201ENST00000507042 360 ntBASIC19.95■□□□□ 0.78
LRRC53A6NM62 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LRRC53A6NM62 DGCR10-201ENST00000609839 495 ntBASIC19.95■□□□□ 0.78
LRRC53A6NM62 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 AP000997.3-201ENST00000623333 2250 ntBASIC19.95■□□□□ 0.78
LRRC53A6NM62 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC53A6NM62 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC53A6NM62 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.94■□□□□ 0.78
LRRC53A6NM62 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
LRRC53A6NM62 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms