Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC32.03■■■□□ 2.72
CCDC88BA6NC98 IRF8-202ENST00000562492 946 ntTSL 3 BASIC32.03■■■□□ 2.72
CCDC88BA6NC98 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC32.03■■■□□ 2.72
CCDC88BA6NC98 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC32.03■■■□□ 2.72
CCDC88BA6NC98 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
CCDC88BA6NC98 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 AC068472.1-201ENST00000474589 881 ntBASIC32.02■■■□□ 2.72
CCDC88BA6NC98 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 BID-204ENST00000399767 2129 ntTSL 2 BASIC32.02■■■□□ 2.72
CCDC88BA6NC98 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC32.01■■■□□ 2.72
CCDC88BA6NC98 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
CCDC88BA6NC98 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC32.01■■■□□ 2.72
CCDC88BA6NC98 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC32.01■■■□□ 2.72
CCDC88BA6NC98 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 INTS4P1-201ENST00000438455 1935 ntBASIC32.01■■■□□ 2.71
CCDC88BA6NC98 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 AL032819.2-201ENST00000624543 2162 ntBASIC32.01■■■□□ 2.71
CCDC88BA6NC98 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 AC083906.6-201ENST00000641366 219 ntBASIC32.01■■■□□ 2.71
CCDC88BA6NC98 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC32.01■■■□□ 2.71
CCDC88BA6NC98 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 SDHAP2-201ENST00000455183 2001 ntBASIC32■■■□□ 2.71
CCDC88BA6NC98 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC32■■■□□ 2.71
CCDC88BA6NC98 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 SCARNA2-201ENST00000458748 420 ntBASIC32■■■□□ 2.71
CCDC88BA6NC98 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC32■■■□□ 2.71
CCDC88BA6NC98 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
CCDC88BA6NC98 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC32■■■□□ 2.71
CCDC88BA6NC98 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC32■■■□□ 2.71
CCDC88BA6NC98 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC32■■■□□ 2.71
CCDC88BA6NC98 AC009102.3-201ENST00000623118 1491 ntBASIC32■■■□□ 2.71
CCDC88BA6NC98 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88BA6NC98 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 PGAM5P1-201ENST00000518923 814 ntBASIC31.98■■■□□ 2.71
CCDC88BA6NC98 IGHV3-22-201ENST00000520721 359 ntBASIC31.98■■■□□ 2.71
CCDC88BA6NC98 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC31.98■■■□□ 2.71
CCDC88BA6NC98 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 AC145285.3-201ENST00000564603 959 ntBASIC31.97■■■□□ 2.71
CCDC88BA6NC98 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PAN3-AS1-201ENST00000563843 1351 ntBASIC31.97■■■□□ 2.71
CCDC88BA6NC98 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms