Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 TSPY21P-201ENST00000433481 731 ntBASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC093677.2-201ENST00000600169 1863 ntBASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC004911.1-201ENST00000416316 871 ntBASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC105036.2-201ENST00000569468 176 ntBASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.46■□□□□ 0.55
USH1CQ9Y6N9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
USH1CQ9Y6N9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
USH1CQ9Y6N9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
USH1CQ9Y6N9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.46■□□□□ 0.54
USH1CQ9Y6N9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 AC141586.5-201ENST00000624546 2050 ntBASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 AL499627.1-201ENST00000569373 2188 ntBASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
USH1CQ9Y6N9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 HEIH-201ENST00000623091 1652 ntBASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USH1CQ9Y6N9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms