Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 AP001005.1-201ENST00000571755 1248 ntBASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.31■□□□□ 0.68
LIMD1Q9UGP4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 REXO1L6P-202ENST00000619970 1078 ntBASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMD1Q9UGP4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 KRT8P7-201ENST00000533003 1432 ntBASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 GPR32P1-201ENST00000601788 811 ntBASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMD1Q9UGP4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 NUS1P2-201ENST00000417358 873 ntBASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 GUSBP12-201ENST00000513727 720 ntBASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms