Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LETM1P2-201ENST00000597330 2178 ntBASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 AC141257.4-201ENST00000634557 245 ntBASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 AC136944.6-201ENST00000634818 245 ntBASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
CUEDC1Q9NWM3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AC034236.2-201ENST00000606662 1610 ntBASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 WIZP1-201ENST00000531444 2299 ntBASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AL512604.3-201ENST00000569583 964 ntBASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AL138781.2-201ENST00000617896 1843 ntBASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.91■□□□□ 0.46
CUEDC1Q9NWM3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 KRT18P23-201ENST00000435622 1283 ntBASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 KRT126P-201ENST00000549467 1181 ntBASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 AC126763.1-201ENST00000552015 2118 ntBASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.9■□□□□ 0.46
CUEDC1Q9NWM3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CUEDC1Q9NWM3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CUEDC1Q9NWM3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CUEDC1Q9NWM3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CUEDC1Q9NWM3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.89■□□□□ 0.45
CUEDC1Q9NWM3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.89■□□□□ 0.45
CUEDC1Q9NWM3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CUEDC1Q9NWM3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CUEDC1Q9NWM3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms