Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK1Q99986 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.38■□□□□ 0.21
VRK1Q99986 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VRK1Q99986 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.37■□□□□ 0.21
VRK1Q99986 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.37■□□□□ 0.21
VRK1Q99986 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.37■□□□□ 0.21
VRK1Q99986 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 HTR7P1-202ENST00000624664 4411 ntBASIC16.37■□□□□ 0.21
VRK1Q99986 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VRK1Q99986 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VRK1Q99986 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VRK1Q99986 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK1Q99986 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK1Q99986 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VRK1Q99986 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.36■□□□□ 0.21
VRK1Q99986 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK1Q99986 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.36■□□□□ 0.21
VRK1Q99986 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
VRK1Q99986 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.36■□□□□ 0.21
VRK1Q99986 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.36■□□□□ 0.21
VRK1Q99986 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 AC096733.2-201ENST00000609937 1394 ntBASIC16.36■□□□□ 0.21
VRK1Q99986 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK1Q99986 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK1Q99986 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
VRK1Q99986 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.35■□□□□ 0.21
VRK1Q99986 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
VRK1Q99986 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.35■□□□□ 0.21
VRK1Q99986 AC010203.1-204ENST00000548782 407 ntBASIC16.35■□□□□ 0.21
VRK1Q99986 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VRK1Q99986 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VRK1Q99986 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VRK1Q99986 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK1Q99986 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK1Q99986 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VRK1Q99986 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK1Q99986 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK1Q99986 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK1Q99986 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK1Q99986 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK1Q99986 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms