Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.7■□□□□ 0.26
SPENQ96T58 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SPENQ96T58 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.7■□□□□ 0.26
SPENQ96T58 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SPENQ96T58 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.7■□□□□ 0.26
SPENQ96T58 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.7■□□□□ 0.26
SPENQ96T58 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.7■□□□□ 0.26
SPENQ96T58 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SPENQ96T58 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.7■□□□□ 0.26
SPENQ96T58 AC093484.2-201ENST00000580996 2166 ntBASIC16.7■□□□□ 0.26
SPENQ96T58 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.7■□□□□ 0.26
SPENQ96T58 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.69■□□□□ 0.26
SPENQ96T58 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 MIR940-201ENST00000401276 94 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.69■□□□□ 0.26
SPENQ96T58 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 AC124864.1-201ENST00000623408 392 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 AC116407.3-201ENST00000623905 1129 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.69■□□□□ 0.26
SPENQ96T58 AC104819.1-201ENST00000504587 486 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.69■□□□□ 0.26
SPENQ96T58 AP001160.2-201ENST00000596071 487 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 AC025062.2-201ENST00000605477 670 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.69■□□□□ 0.26
SPENQ96T58 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SPENQ96T58 AC104109.2-201ENST00000602919 1418 ntBASIC16.69■□□□□ 0.26
SPENQ96T58 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SPENQ96T58 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.68■□□□□ 0.26
SPENQ96T58 AC010327.4-202ENST00000591484 748 ntBASIC16.68■□□□□ 0.26
SPENQ96T58 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.68■□□□□ 0.26
SPENQ96T58 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SPENQ96T58 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.68■□□□□ 0.26
SPENQ96T58 AC090616.6-201ENST00000582640 721 ntBASIC16.68■□□□□ 0.26
SPENQ96T58 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
SPENQ96T58 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.68■□□□□ 0.26
SPENQ96T58 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SPENQ96T58 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.68■□□□□ 0.26
SPENQ96T58 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.68■□□□□ 0.26
SPENQ96T58 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.68■□□□□ 0.26
SPENQ96T58 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SPENQ96T58 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SPENQ96T58 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.68■□□□□ 0.26
SPENQ96T58 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.67■□□□□ 0.26
SPENQ96T58 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.67■□□□□ 0.26
SPENQ96T58 FAM197Y8-203ENST00000450145 560 ntBASIC16.67■□□□□ 0.26
SPENQ96T58 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.67■□□□□ 0.26
SPENQ96T58 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.67■□□□□ 0.26
SPENQ96T58 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.67■□□□□ 0.26
SPENQ96T58 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SPENQ96T58 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.67■□□□□ 0.26
SPENQ96T58 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SPENQ96T58 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 KRT8P7-201ENST00000533003 1432 ntBASIC16.67■□□□□ 0.26
SPENQ96T58 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
SPENQ96T58 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SPENQ96T58 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.67■□□□□ 0.26
SPENQ96T58 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms