Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.15■□□□□ 0.5
CFAP54Q96N23 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CFAP54Q96N23 AP001271.2-201ENST00000624018 1556 ntBASIC18.15■□□□□ 0.5
CFAP54Q96N23 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CFAP54Q96N23 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.15■□□□□ 0.5
CFAP54Q96N23 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.15■□□□□ 0.5
CFAP54Q96N23 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.15■□□□□ 0.5
CFAP54Q96N23 AJ011932.1-201ENST00000621707 465 ntBASIC18.15■□□□□ 0.5
CFAP54Q96N23 AL162377.1-201ENST00000618844 1793 ntBASIC18.15■□□□□ 0.5
CFAP54Q96N23 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CFAP54Q96N23 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.14■□□□□ 0.5
CFAP54Q96N23 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.14■□□□□ 0.5
CFAP54Q96N23 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CFAP54Q96N23 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CFAP54Q96N23 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
CFAP54Q96N23 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CFAP54Q96N23 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CFAP54Q96N23 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 GPR32P1-201ENST00000601788 811 ntBASIC18.14■□□□□ 0.49
CFAP54Q96N23 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.14■□□□□ 0.49
CFAP54Q96N23 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.14■□□□□ 0.49
CFAP54Q96N23 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.14■□□□□ 0.49
CFAP54Q96N23 AC114341.1-201ENST00000618070 349 ntBASIC18.14■□□□□ 0.49
CFAP54Q96N23 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CFAP54Q96N23 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.14■□□□□ 0.49
CFAP54Q96N23 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 MIR6752-201ENST00000618442 71 ntBASIC18.13■□□□□ 0.49
CFAP54Q96N23 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 PRSS29P-201ENST00000440800 595 ntBASIC18.13■□□□□ 0.49
CFAP54Q96N23 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 MIR4745-201ENST00000577608 62 ntBASIC18.13■□□□□ 0.49
CFAP54Q96N23 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CFAP54Q96N23 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CFAP54Q96N23 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 AC092910.1-201ENST00000482027 1129 ntBASIC18.12■□□□□ 0.49
CFAP54Q96N23 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CFAP54Q96N23 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.12■□□□□ 0.49
CFAP54Q96N23 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 AP005117.1-201ENST00000584346 1413 ntBASIC18.11■□□□□ 0.49
CFAP54Q96N23 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 SIGLEC30P-201ENST00000455569 941 ntBASIC18.11■□□□□ 0.49
CFAP54Q96N23 AC021087.4-201ENST00000563761 564 ntBASIC18.11■□□□□ 0.49
CFAP54Q96N23 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.11■□□□□ 0.49
CFAP54Q96N23 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CFAP54Q96N23 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms