Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 SEC1P-202ENST00000473944 940 ntBASIC20.08■□□□□ 0.81
VPS52Q8N1B4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 KRT8P3-201ENST00000519669 1449 ntBASIC20.08■□□□□ 0.8
VPS52Q8N1B4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS52Q8N1B4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS52Q8N1B4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS52Q8N1B4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.08■□□□□ 0.8
VPS52Q8N1B4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
VPS52Q8N1B4 AC016734.2-201ENST00000624325 1377 ntBASIC20.08■□□□□ 0.8
VPS52Q8N1B4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 PRELID1P1-202ENST00000567272 903 ntBASIC20.07■□□□□ 0.8
VPS52Q8N1B4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS52Q8N1B4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 AC090340.1-201ENST00000620778 4980 ntBASIC20.06■□□□□ 0.8
VPS52Q8N1B4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 Z82202.1-201ENST00000623446 1880 ntBASIC20.06■□□□□ 0.8
VPS52Q8N1B4 AC079602.3-201ENST00000623931 403 ntBASIC20.06■□□□□ 0.8
VPS52Q8N1B4 AC112497.1-201ENST00000624824 639 ntBASIC20.06■□□□□ 0.8
VPS52Q8N1B4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS52Q8N1B4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS52Q8N1B4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms