Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.02■□□□□ 0.8
KRT39Q6A163 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.02■□□□□ 0.8
KRT39Q6A163 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.02■□□□□ 0.8
KRT39Q6A163 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.02■□□□□ 0.8
KRT39Q6A163 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT39Q6A163 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
KRT39Q6A163 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.02■□□□□ 0.8
KRT39Q6A163 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT39Q6A163 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
KRT39Q6A163 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
KRT39Q6A163 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
KRT39Q6A163 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
KRT39Q6A163 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.01■□□□□ 0.79
KRT39Q6A163 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT39Q6A163 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.01■□□□□ 0.79
KRT39Q6A163 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT39Q6A163 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 ECEL1P3-201ENST00000427961 737 ntBASIC20.01■□□□□ 0.79
KRT39Q6A163 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.01■□□□□ 0.79
KRT39Q6A163 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.01■□□□□ 0.79
KRT39Q6A163 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.01■□□□□ 0.79
KRT39Q6A163 NEK4P2-201ENST00000580004 1012 ntBASIC20.01■□□□□ 0.79
KRT39Q6A163 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT39Q6A163 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.01■□□□□ 0.79
KRT39Q6A163 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
KRT39Q6A163 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
KRT39Q6A163 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20■□□□□ 0.79
KRT39Q6A163 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20■□□□□ 0.79
KRT39Q6A163 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 GRAMD4P1-201ENST00000435181 1110 ntBASIC20■□□□□ 0.79
KRT39Q6A163 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 AC104390.1-201ENST00000555663 520 ntBASIC20■□□□□ 0.79
KRT39Q6A163 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20■□□□□ 0.79
KRT39Q6A163 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
KRT39Q6A163 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
KRT39Q6A163 AC020763.4-201ENST00000623414 4170 ntBASIC20■□□□□ 0.79
KRT39Q6A163 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20■□□□□ 0.79
KRT39Q6A163 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20■□□□□ 0.79
KRT39Q6A163 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
KRT39Q6A163 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.99■□□□□ 0.79
KRT39Q6A163 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.99■□□□□ 0.79
KRT39Q6A163 AL163051.1-201ENST00000569214 1512 ntBASIC19.99■□□□□ 0.79
KRT39Q6A163 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
KRT39Q6A163 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.99■□□□□ 0.79
KRT39Q6A163 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.99■□□□□ 0.79
KRT39Q6A163 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.99■□□□□ 0.79
KRT39Q6A163 AL138966.2-201ENST00000621997 464 ntBASIC19.99■□□□□ 0.79
KRT39Q6A163 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.99■□□□□ 0.79
KRT39Q6A163 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
KRT39Q6A163 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms