Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC144BQ3MJ40 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC144BQ3MJ40 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.52■■□□□ 1.03
CCDC144BQ3MJ40 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC144BQ3MJ40 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 LINC01311-201ENST00000565162 1445 ntBASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 PCDHB18P-201ENST00000524813 2368 ntBASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC144BQ3MJ40 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 SPDYE15P-201ENST00000424157 909 ntBASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 WIZP1-201ENST00000531444 2299 ntBASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC144BQ3MJ40 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 CR769767.2-201ENST00000622735 460 ntBASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC144BQ3MJ40 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 CLEC4GP1-201ENST00000596555 870 ntBASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms