Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHD9Q3L8U1 KRT8P32-201ENST00000512863 1461 ntBASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 TCF3P1-201ENST00000423021 1937 ntBASIC19.6■□□□□ 0.73
CHD9Q3L8U1 INTS4P1-201ENST00000438455 1935 ntBASIC19.6■□□□□ 0.73
CHD9Q3L8U1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.6■□□□□ 0.73
CHD9Q3L8U1 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 AL596442.2-201ENST00000610240 980 ntBASIC19.6■□□□□ 0.73
CHD9Q3L8U1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHD9Q3L8U1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 AC125437.2-201ENST00000625180 2167 ntBASIC19.59■□□□□ 0.73
CHD9Q3L8U1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 AC002347.1-201ENST00000569543 541 ntBASIC19.59■□□□□ 0.73
CHD9Q3L8U1 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHD9Q3L8U1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CHD9Q3L8U1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 UNC93B6-202ENST00000528242 690 ntBASIC19.58■□□□□ 0.72
CHD9Q3L8U1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.58■□□□□ 0.72
CHD9Q3L8U1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 LINC01006-201ENST00000333319 2292 ntBASIC19.57■□□□□ 0.72
CHD9Q3L8U1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms