Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 MIR4674-201ENST00000582457 87 ntBASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 AC092338.2-201ENST00000568827 1415 ntBASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD3Q3KNS1 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTCHD3Q3KNS1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 TSPY17P-201ENST00000450329 467 ntBASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 AL353719.1-201ENST00000566847 864 ntBASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 KRT8P45-201ENST00000414328 1447 ntBASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 AC073592.3-201ENST00000625118 1834 ntBASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTCHD3Q3KNS1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms