Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 PMS2P7-201ENST00000506558 1336 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 AC093525.10-201ENST00000625130 1569 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 MIR564-202ENST00000385049 94 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 AC005104.2-201ENST00000427818 678 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 TERC-201ENST00000602385 541 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.8■□□□□ 0.44
COL28A1Q2UY09 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.8■□□□□ 0.44
COL28A1Q2UY09 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 PMS2P2-201ENST00000425039 1128 ntBASIC17.79■□□□□ 0.44
COL28A1Q2UY09 TSPY22P-201ENST00000427496 604 ntBASIC17.79■□□□□ 0.44
COL28A1Q2UY09 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 AC104819.1-201ENST00000504587 486 ntBASIC17.79■□□□□ 0.44
COL28A1Q2UY09 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 AC027796.2-201ENST00000575326 344 ntBASIC17.79■□□□□ 0.44
COL28A1Q2UY09 AC064862.7-201ENST00000604520 867 ntBASIC17.79■□□□□ 0.44
COL28A1Q2UY09 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.79■□□□□ 0.44
COL28A1Q2UY09 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 MIR940-201ENST00000401276 94 ntBASIC17.78■□□□□ 0.44
COL28A1Q2UY09 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms