Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNA1P78396 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCNA1P78396 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNA1P78396 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CCNA1P78396 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CCNA1P78396 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 AL163051.1-201ENST00000569214 1512 ntBASIC21.06■□□□□ 0.96
CCNA1P78396 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.06■□□□□ 0.96
CCNA1P78396 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.06■□□□□ 0.96
CCNA1P78396 AL591684.3-201ENST00000605187 298 ntBASIC21.06■□□□□ 0.96
CCNA1P78396 AL773604.1-201ENST00000617417 272 ntBASIC21.06■□□□□ 0.96
CCNA1P78396 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.06■□□□□ 0.96
CCNA1P78396 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.06■□□□□ 0.96
CCNA1P78396 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.06■□□□□ 0.96
CCNA1P78396 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNA1P78396 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.05■□□□□ 0.96
CCNA1P78396 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.05■□□□□ 0.96
CCNA1P78396 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.05■□□□□ 0.96
CCNA1P78396 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.05■□□□□ 0.96
CCNA1P78396 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCNA1P78396 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.05■□□□□ 0.96
CCNA1P78396 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.05■□□□□ 0.96
CCNA1P78396 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCNA1P78396 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCNA1P78396 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.05■□□□□ 0.96
CCNA1P78396 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 FAM197Y8-203ENST00000450145 560 ntBASIC21.04■□□□□ 0.96
CCNA1P78396 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.04■□□□□ 0.96
CCNA1P78396 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.04■□□□□ 0.96
CCNA1P78396 MIR5100-201ENST00000579544 119 ntBASIC21.04■□□□□ 0.96
CCNA1P78396 BNIP3P18-201ENST00000593976 575 ntBASIC21.04■□□□□ 0.96
CCNA1P78396 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 AC117500.6-201ENST00000624871 588 ntBASIC21.04■□□□□ 0.96
CCNA1P78396 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.04■□□□□ 0.96
CCNA1P78396 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCNA1P78396 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
CCNA1P78396 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CCNA1P78396 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
CCNA1P78396 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.03■□□□□ 0.96
CCNA1P78396 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CCNA1P78396 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.03■□□□□ 0.96
CCNA1P78396 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.03■□□□□ 0.96
CCNA1P78396 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.03■□□□□ 0.96
CCNA1P78396 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.03■□□□□ 0.96
CCNA1P78396 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.03■□□□□ 0.96
CCNA1P78396 TP73-AS1-207ENST00000624167 988 ntBASIC21.03■□□□□ 0.96
CCNA1P78396 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCNA1P78396 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CCNA1P78396 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CCNA1P78396 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.02■□□□□ 0.96
CCNA1P78396 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.02■□□□□ 0.96
CCNA1P78396 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms