Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHB3P54753 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
EPHB3P54753 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
EPHB3P54753 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHB3P54753 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHB3P54753 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.36■□□□□ 0.69
EPHB3P54753 AC073130.3-201ENST00000624389 2278 ntBASIC19.36■□□□□ 0.69
EPHB3P54753 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
EPHB3P54753 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.36■□□□□ 0.69
EPHB3P54753 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.36■□□□□ 0.69
EPHB3P54753 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.36■□□□□ 0.69
EPHB3P54753 AC111152.3-201ENST00000569699 673 ntBASIC19.36■□□□□ 0.69
EPHB3P54753 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.36■□□□□ 0.69
EPHB3P54753 AC083906.6-201ENST00000641366 219 ntBASIC19.36■□□□□ 0.69
EPHB3P54753 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
EPHB3P54753 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHB3P54753 AL163051.1-201ENST00000569214 1512 ntBASIC19.35■□□□□ 0.69
EPHB3P54753 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHB3P54753 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHB3P54753 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHB3P54753 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.35■□□□□ 0.69
EPHB3P54753 TOB2P1-201ENST00000469761 992 ntBASIC19.35■□□□□ 0.69
EPHB3P54753 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.35■□□□□ 0.69
EPHB3P54753 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHB3P54753 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHB3P54753 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHB3P54753 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHB3P54753 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
EPHB3P54753 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
EPHB3P54753 GUSBP12-201ENST00000513727 720 ntBASIC19.34■□□□□ 0.69
EPHB3P54753 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHB3P54753 AC012615.1-201ENST00000565797 1299 ntBASIC19.34■□□□□ 0.69
EPHB3P54753 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.34■□□□□ 0.69
EPHB3P54753 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
EPHB3P54753 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.34■□□□□ 0.69
EPHB3P54753 KRT89P-201ENST00000620027 1478 ntBASIC19.34■□□□□ 0.69
EPHB3P54753 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHB3P54753 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
EPHB3P54753 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
EPHB3P54753 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.33■□□□□ 0.69
EPHB3P54753 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
EPHB3P54753 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
EPHB3P54753 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EPHB3P54753 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EPHB3P54753 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
EPHB3P54753 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
EPHB3P54753 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EPHB3P54753 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.33■□□□□ 0.68
EPHB3P54753 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.33■□□□□ 0.68
EPHB3P54753 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.33■□□□□ 0.68
EPHB3P54753 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EPHB3P54753 RN7SL510P-201ENST00000581311 263 ntBASIC19.33■□□□□ 0.68
EPHB3P54753 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.33■□□□□ 0.68
EPHB3P54753 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EPHB3P54753 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
EPHB3P54753 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EPHB3P54753 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
EPHB3P54753 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
EPHB3P54753 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 AC005332.7-201ENST00000614046 2005 ntBASIC19.32■□□□□ 0.68
EPHB3P54753 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
EPHB3P54753 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms