Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TPM1P09493 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.45■□□□□ 0.86
TPM1P09493 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
TPM1P09493 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM1P09493 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.45■□□□□ 0.86
TPM1P09493 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM1P09493 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM1P09493 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
TPM1P09493 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
TPM1P09493 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
TPM1P09493 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TPM1P09493 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.44■□□□□ 0.86
TPM1P09493 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.44■□□□□ 0.86
TPM1P09493 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.44■□□□□ 0.86
TPM1P09493 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM1P09493 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
TPM1P09493 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 AC112777.1-201ENST00000540175 1423 ntBASIC20.44■□□□□ 0.86
TPM1P09493 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
TPM1P09493 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 MTMR9LP-203ENST00000426597 1545 ntBASIC20.43■□□□□ 0.86
TPM1P09493 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.43■□□□□ 0.86
TPM1P09493 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.43■□□□□ 0.86
TPM1P09493 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 NCF1B-203ENST00000435988 1254 ntBASIC20.43■□□□□ 0.86
TPM1P09493 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.43■□□□□ 0.86
TPM1P09493 AL138781.1-201ENST00000566567 1274 ntBASIC20.43■□□□□ 0.86
TPM1P09493 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.43■□□□□ 0.86
TPM1P09493 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.43■□□□□ 0.86
TPM1P09493 AC083880.1-201ENST00000608266 535 ntBASIC20.43■□□□□ 0.86
TPM1P09493 AC068587.9-201ENST00000641814 219 ntBASIC20.43■□□□□ 0.86
TPM1P09493 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
TPM1P09493 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.43■□□□□ 0.86
TPM1P09493 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TPM1P09493 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 AC139713.2-201ENST00000641328 2723 ntBASIC20.42■□□□□ 0.86
TPM1P09493 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TPM1P09493 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TPM1P09493 POM121L13P-201ENST00000422362 380 ntBASIC20.42■□□□□ 0.86
TPM1P09493 UNC93B4-201ENST00000505679 747 ntBASIC20.42■□□□□ 0.86
TPM1P09493 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.42■□□□□ 0.86
TPM1P09493 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TPM1P09493 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.42■□□□□ 0.86
TPM1P09493 KRT8P41-201ENST00000533985 1514 ntBASIC20.42■□□□□ 0.86
TPM1P09493 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
TPM1P09493 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TPM1P09493 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms