Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VIMP08670 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.64■□□□□ 0.57
VIMP08670 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.64■□□□□ 0.57
VIMP08670 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.64■□□□□ 0.57
VIMP08670 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
VIMP08670 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 AP006587.1-201ENST00000534129 1502 ntBASIC18.64■□□□□ 0.57
VIMP08670 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
VIMP08670 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VIMP08670 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
VIMP08670 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.63■□□□□ 0.57
VIMP08670 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.63■□□□□ 0.57
VIMP08670 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.63■□□□□ 0.57
VIMP08670 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 YBX1P10-201ENST00000444752 975 ntBASIC18.63■□□□□ 0.57
VIMP08670 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.63■□□□□ 0.57
VIMP08670 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.63■□□□□ 0.57
VIMP08670 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.63■□□□□ 0.57
VIMP08670 AC008694.1-202ENST00000636953 945 ntBASIC18.63■□□□□ 0.57
VIMP08670 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VIMP08670 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 KRT17P1-201ENST00000399211 1546 ntBASIC18.63■□□□□ 0.57
VIMP08670 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VIMP08670 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.63■□□□□ 0.57
VIMP08670 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.63■□□□□ 0.57
VIMP08670 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
VIMP08670 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.63■□□□□ 0.57
VIMP08670 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VIMP08670 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VIMP08670 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.62■□□□□ 0.57
VIMP08670 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 GPX1P1-201ENST00000388829 606 ntBASIC18.62■□□□□ 0.57
VIMP08670 KRT18P11-201ENST00000435214 1283 ntBASIC18.62■□□□□ 0.57
VIMP08670 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.62■□□□□ 0.57
VIMP08670 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.62■□□□□ 0.57
VIMP08670 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.62■□□□□ 0.57
VIMP08670 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
VIMP08670 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.62■□□□□ 0.57
VIMP08670 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.62■□□□□ 0.57
VIMP08670 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
VIMP08670 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.62■□□□□ 0.57
VIMP08670 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
VIMP08670 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VIMP08670 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
VIMP08670 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
VIMP08670 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 AL390719.1-204ENST00000412397 1219 ntBASIC18.61■□□□□ 0.57
VIMP08670 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.61■□□□□ 0.57
VIMP08670 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.61■□□□□ 0.57
VIMP08670 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
VIMP08670 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VIMP08670 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms