Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL2A1P02458 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.63■■□□□ 1.05
COL2A1P02458 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.63■■□□□ 1.05
COL2A1P02458 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.63■■□□□ 1.05
COL2A1P02458 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.63■■□□□ 1.05
COL2A1P02458 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL2A1P02458 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
COL2A1P02458 TSPY12P-201ENST00000421279 868 ntBASIC21.62■■□□□ 1.05
COL2A1P02458 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
COL2A1P02458 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.62■■□□□ 1.05
COL2A1P02458 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.62■■□□□ 1.05
COL2A1P02458 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.62■■□□□ 1.05
COL2A1P02458 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 AC114341.1-201ENST00000618070 349 ntBASIC21.62■■□□□ 1.05
COL2A1P02458 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.62■■□□□ 1.05
COL2A1P02458 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.62■■□□□ 1.05
COL2A1P02458 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL2A1P02458 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL2A1P02458 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.61■■□□□ 1.05
COL2A1P02458 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.61■■□□□ 1.05
COL2A1P02458 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.61■■□□□ 1.05
COL2A1P02458 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.61■■□□□ 1.05
COL2A1P02458 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL2A1P02458 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL2A1P02458 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.61■■□□□ 1.05
COL2A1P02458 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL2A1P02458 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.61■■□□□ 1.05
COL2A1P02458 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 POM121L3P-201ENST00000419331 1163 ntBASIC21.6■■□□□ 1.05
COL2A1P02458 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.6■■□□□ 1.05
COL2A1P02458 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.6■■□□□ 1.05
COL2A1P02458 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.6■■□□□ 1.05
COL2A1P02458 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.6■■□□□ 1.05
COL2A1P02458 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.6■■□□□ 1.05
COL2A1P02458 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.6■■□□□ 1.05
COL2A1P02458 AC006538.3-201ENST00000612495 578 ntBASIC21.6■■□□□ 1.05
COL2A1P02458 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.6■■□□□ 1.05
COL2A1P02458 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
COL2A1P02458 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL2A1P02458 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.6■■□□□ 1.05
COL2A1P02458 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.59■■□□□ 1.05
COL2A1P02458 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.59■■□□□ 1.05
COL2A1P02458 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.59■■□□□ 1.05
COL2A1P02458 AL662844.1-201ENST00000546340 181 ntBASIC21.59■■□□□ 1.05
COL2A1P02458 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.59■■□□□ 1.05
COL2A1P02458 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
COL2A1P02458 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 GPALPP1-207ENST00000611650 899 ntBASIC21.59■■□□□ 1.05
COL2A1P02458 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms