Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.28■□□□□ 0.52
SNX3O60493 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SNX3O60493 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.28■□□□□ 0.52
SNX3O60493 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SNX3O60493 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
SNX3O60493 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SNX3O60493 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SNX3O60493 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.27■□□□□ 0.52
SNX3O60493 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SNX3O60493 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.27■□□□□ 0.52
SNX3O60493 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SNX3O60493 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.27■□□□□ 0.52
SNX3O60493 AC046158.3-201ENST00000624947 2558 ntBASIC18.27■□□□□ 0.52
SNX3O60493 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SNX3O60493 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.27■□□□□ 0.52
SNX3O60493 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.27■□□□□ 0.52
SNX3O60493 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.27■□□□□ 0.52
SNX3O60493 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.27■□□□□ 0.52
SNX3O60493 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.27■□□□□ 0.52
SNX3O60493 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.27■□□□□ 0.52
SNX3O60493 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.27■□□□□ 0.52
SNX3O60493 OR10C1-204ENST00000622521 1039 ntBASIC18.27■□□□□ 0.52
SNX3O60493 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
SNX3O60493 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
SNX3O60493 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
SNX3O60493 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SNX3O60493 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.26■□□□□ 0.51
SNX3O60493 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.26■□□□□ 0.51
SNX3O60493 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.26■□□□□ 0.51
SNX3O60493 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.26■□□□□ 0.51
SNX3O60493 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.26■□□□□ 0.51
SNX3O60493 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.26■□□□□ 0.51
SNX3O60493 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.26■□□□□ 0.51
SNX3O60493 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.26■□□□□ 0.51
SNX3O60493 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SNX3O60493 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNX3O60493 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.26■□□□□ 0.51
SNX3O60493 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNX3O60493 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SNX3O60493 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.26■□□□□ 0.51
SNX3O60493 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SNX3O60493 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SNX3O60493 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.25■□□□□ 0.51
SNX3O60493 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.25■□□□□ 0.51
SNX3O60493 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNX3O60493 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.25■□□□□ 0.51
SNX3O60493 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms