Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.82■□□□□ 0.92
ACTN4O43707 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ACTN4O43707 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
ACTN4O43707 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.82■□□□□ 0.92
ACTN4O43707 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ACTN4O43707 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ACTN4O43707 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.82■□□□□ 0.92
ACTN4O43707 AP003071.4-201ENST00000562276 1284 ntBASIC20.82■□□□□ 0.92
ACTN4O43707 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.82■□□□□ 0.92
ACTN4O43707 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
ACTN4O43707 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.82■□□□□ 0.92
ACTN4O43707 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ACTN4O43707 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.82■□□□□ 0.92
ACTN4O43707 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
ACTN4O43707 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.82■□□□□ 0.92
ACTN4O43707 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
ACTN4O43707 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.81■□□□□ 0.92
ACTN4O43707 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
ACTN4O43707 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 AC005332.8-201ENST00000622750 2735 ntBASIC20.81■□□□□ 0.92
ACTN4O43707 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.81■□□□□ 0.92
ACTN4O43707 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.81■□□□□ 0.92
ACTN4O43707 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.81■□□□□ 0.92
ACTN4O43707 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.81■□□□□ 0.92
ACTN4O43707 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.81■□□□□ 0.92
ACTN4O43707 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ACTN4O43707 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
ACTN4O43707 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.8■□□□□ 0.92
ACTN4O43707 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.8■□□□□ 0.92
ACTN4O43707 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.8■□□□□ 0.92
ACTN4O43707 AC034236.2-201ENST00000606662 1610 ntBASIC20.8■□□□□ 0.92
ACTN4O43707 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.8■□□□□ 0.92
ACTN4O43707 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 RBM17P1-201ENST00000453646 1190 ntBASIC20.8■□□□□ 0.92
ACTN4O43707 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.8■□□□□ 0.92
ACTN4O43707 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.8■□□□□ 0.92
ACTN4O43707 AL023803.3-201ENST00000615559 522 ntBASIC20.8■□□□□ 0.92
ACTN4O43707 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ACTN4O43707 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ACTN4O43707 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.79■□□□□ 0.92
ACTN4O43707 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
ACTN4O43707 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.79■□□□□ 0.92
ACTN4O43707 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 AP000593.1-201ENST00000393668 712 ntBASIC20.79■□□□□ 0.92
ACTN4O43707 TSPY7P-201ENST00000431358 1114 ntBASIC20.79■□□□□ 0.92
ACTN4O43707 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.79■□□□□ 0.92
ACTN4O43707 AC008550.1-201ENST00000511500 884 ntBASIC20.79■□□□□ 0.92
ACTN4O43707 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.79■□□□□ 0.92
ACTN4O43707 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.79■□□□□ 0.92
ACTN4O43707 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
ACTN4O43707 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.79■□□□□ 0.92
ACTN4O43707 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.79■□□□□ 0.92
ACTN4O43707 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ACTN4O43707 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 AC026471.1-201ENST00000564629 3026 ntBASIC20.79■□□□□ 0.92
ACTN4O43707 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ACTN4O43707 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ACTN4O43707 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ACTN4O43707 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ACTN4O43707 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ACTN4O43707 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.78■□□□□ 0.92
ACTN4O43707 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ACTN4O43707 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.78■□□□□ 0.92
ACTN4O43707 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms