Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP1O15259 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP1O15259 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP1O15259 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.33■■□□□ 1.33
NPHP1O15259 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.33■■□□□ 1.33
NPHP1O15259 AL121912.1-201ENST00000603683 238 ntBASIC23.33■■□□□ 1.33
NPHP1O15259 AC124864.1-201ENST00000623408 392 ntBASIC23.33■■□□□ 1.33
NPHP1O15259 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP1O15259 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
NPHP1O15259 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP1O15259 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.33■■□□□ 1.32
NPHP1O15259 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP1O15259 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP1O15259 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
NPHP1O15259 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
NPHP1O15259 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP1O15259 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
NPHP1O15259 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP1O15259 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 MIR564-202ENST00000385049 94 ntBASIC23.32■■□□□ 1.32
NPHP1O15259 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
NPHP1O15259 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.32■■□□□ 1.32
NPHP1O15259 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.32■■□□□ 1.32
NPHP1O15259 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 AC034236.2-201ENST00000606662 1610 ntBASIC23.32■■□□□ 1.32
NPHP1O15259 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP1O15259 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP1O15259 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
NPHP1O15259 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP1O15259 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.31■■□□□ 1.32
NPHP1O15259 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
NPHP1O15259 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP1O15259 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP1O15259 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC23.31■■□□□ 1.32
NPHP1O15259 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.31■■□□□ 1.32
NPHP1O15259 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP1O15259 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP1O15259 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP1O15259 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.31■■□□□ 1.32
NPHP1O15259 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
NPHP1O15259 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.3■■□□□ 1.32
NPHP1O15259 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.3■■□□□ 1.32
NPHP1O15259 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
NPHP1O15259 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
NPHP1O15259 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.3■■□□□ 1.32
NPHP1O15259 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 NUS1P2-201ENST00000417358 873 ntBASIC23.3■■□□□ 1.32
NPHP1O15259 KRT16P4-201ENST00000453883 522 ntBASIC23.3■■□□□ 1.32
NPHP1O15259 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.3■■□□□ 1.32
NPHP1O15259 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP1O15259 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP1O15259 SLC25A6P4-201ENST00000586535 553 ntBASIC23.3■■□□□ 1.32
NPHP1O15259 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP1O15259 AL592071.1-201ENST00000611956 408 ntBASIC23.3■■□□□ 1.32
NPHP1O15259 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP1O15259 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.3■■□□□ 1.32
NPHP1O15259 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.29■■□□□ 1.32
NPHP1O15259 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
NPHP1O15259 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
NPHP1O15259 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms