Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AL121672.3-201ENST00000608644 468 ntBASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AC068587.9-201ENST00000641814 219 ntBASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 HEIH-201ENST00000623091 1652 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 ATP5G2P1-201ENST00000433580 426 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 HLA-F-220ENST00000434407 884 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 BX276092.5-203ENST00000456199 560 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AC011498.5-201ENST00000592027 486 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AC092119.3-201ENST00000612618 583 ntBASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV40A0A0B4J280 AL161938.1-201ENST00000569833 2180 ntBASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 BCL2-203ENST00000589955 5011 ntBASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 Z98044.1-201ENST00000632503 1764 ntBASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 CLEC4GP1-201ENST00000596555 870 ntBASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV40A0A0B4J280 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV40A0A0B4J280 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV40A0A0B4J280 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms