Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 STARP1-201ENST00000397973 869 ntBASIC21.34■■□□□ 1.01
DDX41Q9UJV9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 HYMAI.1-201ENST00000620949 238 ntBASIC21.34■■□□□ 1.01
DDX41Q9UJV9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX41Q9UJV9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 AC112907.2-201ENST00000448639 330 ntBASIC21.33■■□□□ 1.01
DDX41Q9UJV9 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX41Q9UJV9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.33■■□□□ 1
DDX41Q9UJV9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
DDX41Q9UJV9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.33■■□□□ 1
DDX41Q9UJV9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
DDX41Q9UJV9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
DDX41Q9UJV9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1
DDX41Q9UJV9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 AL133373.2-201ENST00000623187 2828 ntBASIC21.32■■□□□ 1
DDX41Q9UJV9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.32■■□□□ 1
DDX41Q9UJV9 AL023284.2-201ENST00000405850 579 ntBASIC21.32■■□□□ 1
DDX41Q9UJV9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.32■■□□□ 1
DDX41Q9UJV9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.32■■□□□ 1
DDX41Q9UJV9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
DDX41Q9UJV9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.32■■□□□ 1
DDX41Q9UJV9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
DDX41Q9UJV9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 AC005332.1-201ENST00000577698 1310 ntBASIC21.31■■□□□ 1
DDX41Q9UJV9 AC018470.1-201ENST00000624790 3129 ntBASIC21.31■■□□□ 1
DDX41Q9UJV9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
DDX41Q9UJV9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.31■■□□□ 1
DDX41Q9UJV9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC21.31■■□□□ 1
DDX41Q9UJV9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms