Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 LINC01311-201ENST00000565162 1445 ntBASIC19.85■□□□□ 0.77
SIX4Q9UIU6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 AL391807.1-203ENST00000604392 2365 ntBASIC19.84■□□□□ 0.77
SIX4Q9UIU6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SIX4Q9UIU6 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 AL138781.2-201ENST00000617896 1843 ntBASIC19.83■□□□□ 0.77
SIX4Q9UIU6 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 SDHAP2-201ENST00000455183 2001 ntBASIC19.83■□□□□ 0.77
SIX4Q9UIU6 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 VENTXP5-201ENST00000523979 775 ntBASIC19.83■□□□□ 0.77
SIX4Q9UIU6 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SIX4Q9UIU6 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.83■□□□□ 0.76
SIX4Q9UIU6 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.83■□□□□ 0.76
SIX4Q9UIU6 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX4Q9UIU6 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX4Q9UIU6 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SIX4Q9UIU6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 WIZP1-201ENST00000531444 2299 ntBASIC19.82■□□□□ 0.76
SIX4Q9UIU6 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 MIR149-201ENST00000384879 89 ntBASIC19.82■□□□□ 0.76
SIX4Q9UIU6 PVRIG2P-201ENST00000435460 978 ntBASIC19.82■□□□□ 0.76
SIX4Q9UIU6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 AL136038.4-201ENST00000603606 1261 ntBASIC19.82■□□□□ 0.76
SIX4Q9UIU6 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SIX4Q9UIU6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.81■□□□□ 0.76
SIX4Q9UIU6 FAM86EP-206ENST00000510506 987 ntBASIC19.81■□□□□ 0.76
SIX4Q9UIU6 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms