Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 RBM17P2-201ENST00000616397 1405 ntBASIC17.38■□□□□ 0.37
VCX3AQ9NNX9 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCX3AQ9NNX9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 CCDC92B-201ENST00000575506 885 ntBASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCX3AQ9NNX9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms