Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 AL590627.1-203ENST00000421194 1026 ntBASIC23.57■■□□□ 1.36
USP42Q9H9J4 AF238378.1-201ENST00000526806 358 ntBASIC23.57■■□□□ 1.36
USP42Q9H9J4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 AC091607.1-201ENST00000490318 1060 ntBASIC23.56■■□□□ 1.36
USP42Q9H9J4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP42Q9H9J4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 MIR3180-4-201ENST00000582223 153 ntBASIC23.56■■□□□ 1.36
USP42Q9H9J4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.56■■□□□ 1.36
USP42Q9H9J4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC23.56■■□□□ 1.36
USP42Q9H9J4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP42Q9H9J4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP42Q9H9J4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP42Q9H9J4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC23.55■■□□□ 1.36
USP42Q9H9J4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 AC124864.1-201ENST00000623408 392 ntBASIC23.54■■□□□ 1.36
USP42Q9H9J4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.54■■□□□ 1.36
USP42Q9H9J4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP42Q9H9J4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 NUS1P2-201ENST00000417358 873 ntBASIC23.53■■□□□ 1.36
USP42Q9H9J4 PMS2P1-201ENST00000431037 1228 ntBASIC23.53■■□□□ 1.36
USP42Q9H9J4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC23.53■■□□□ 1.36
USP42Q9H9J4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 AC139530.3-201ENST00000620344 690 ntBASIC23.53■■□□□ 1.36
USP42Q9H9J4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC23.53■■□□□ 1.36
USP42Q9H9J4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP42Q9H9J4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP42Q9H9J4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms