Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 KRT16P1-201ENST00000399124 1418 ntBASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM56Q9BRZ2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 AC004951.3-201ENST00000418645 1148 ntBASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 AC011298.2-201ENST00000617989 482 ntBASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 KRT8P32-201ENST00000512863 1461 ntBASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM56Q9BRZ2 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 MESTP1-201ENST00000404287 994 ntBASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms