Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL12A1Q99715 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 AL109659.2-201ENST00000606809 1674 ntBASIC16.19■□□□□ 0.18
COL12A1Q99715 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL12A1Q99715 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL12A1Q99715 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL12A1Q99715 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.19■□□□□ 0.18
COL12A1Q99715 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL12A1Q99715 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL12A1Q99715 AL137060.1-201ENST00000618151 2648 ntBASIC16.19■□□□□ 0.18
COL12A1Q99715 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL12A1Q99715 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL12A1Q99715 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.19■□□□□ 0.18
COL12A1Q99715 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.18■□□□□ 0.18
COL12A1Q99715 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.18■□□□□ 0.18
COL12A1Q99715 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.18■□□□□ 0.18
COL12A1Q99715 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.18■□□□□ 0.18
COL12A1Q99715 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 AC073314.1-201ENST00000568729 2216 ntBASIC16.18■□□□□ 0.18
COL12A1Q99715 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL12A1Q99715 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 MCCD1P2-201ENST00000423228 335 ntBASIC16.17■□□□□ 0.18
COL12A1Q99715 AC092474.2-201ENST00000424288 719 ntBASIC16.17■□□□□ 0.18
COL12A1Q99715 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.17■□□□□ 0.18
COL12A1Q99715 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.17■□□□□ 0.18
COL12A1Q99715 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.17■□□□□ 0.18
COL12A1Q99715 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.17■□□□□ 0.18
COL12A1Q99715 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL12A1Q99715 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL12A1Q99715 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL12A1Q99715 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL12A1Q99715 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.16■□□□□ 0.18
COL12A1Q99715 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.16■□□□□ 0.18
COL12A1Q99715 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.16■□□□□ 0.18
COL12A1Q99715 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
COL12A1Q99715 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.16■□□□□ 0.18
COL12A1Q99715 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL12A1Q99715 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.16■□□□□ 0.18
COL12A1Q99715 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.16■□□□□ 0.18
COL12A1Q99715 AJ011932.1-201ENST00000621707 465 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms