Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.26■□□□□ 0.99
USP28Q96RU2 AC233702.5-201ENST00000584107 538 ntBASIC21.26■□□□□ 0.99
USP28Q96RU2 REXO1L10P-201ENST00000615707 1290 ntBASIC21.26■□□□□ 0.99
USP28Q96RU2 REXO1L12P-201ENST00000622156 912 ntBASIC21.26■□□□□ 0.99
USP28Q96RU2 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP28Q96RU2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP28Q96RU2 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP28Q96RU2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP28Q96RU2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.26■□□□□ 0.99
USP28Q96RU2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.26■□□□□ 0.99
USP28Q96RU2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP28Q96RU2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP28Q96RU2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP28Q96RU2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
USP28Q96RU2 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.25■□□□□ 0.99
USP28Q96RU2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.25■□□□□ 0.99
USP28Q96RU2 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
USP28Q96RU2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.25■□□□□ 0.99
USP28Q96RU2 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
USP28Q96RU2 UBE2SP1-201ENST00000450587 669 ntBASIC21.25■□□□□ 0.99
USP28Q96RU2 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 AC097488.1-201ENST00000507834 756 ntBASIC21.25■□□□□ 0.99
USP28Q96RU2 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.25■□□□□ 0.99
USP28Q96RU2 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
USP28Q96RU2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 AC008764.6-201ENST00000595909 2069 ntBASIC21.25■□□□□ 0.99
USP28Q96RU2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
USP28Q96RU2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP28Q96RU2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
USP28Q96RU2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 AC099343.3-201ENST00000605834 2503 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP28Q96RU2 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.24■□□□□ 0.99
USP28Q96RU2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 AC012618.2-201ENST00000428058 849 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 MCCD1P1-208ENST00000445732 328 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.24■□□□□ 0.99
USP28Q96RU2 MIR4674-201ENST00000582457 87 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 AL049637.2-201ENST00000641778 930 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.24■□□□□ 0.99
USP28Q96RU2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
USP28Q96RU2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
USP28Q96RU2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP28Q96RU2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.24■□□□□ 0.99
USP28Q96RU2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
USP28Q96RU2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP28Q96RU2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP28Q96RU2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.23■□□□□ 0.99
USP28Q96RU2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP28Q96RU2 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.23■□□□□ 0.99
USP28Q96RU2 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.23■□□□□ 0.99
USP28Q96RU2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.23■□□□□ 0.99
USP28Q96RU2 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.23■□□□□ 0.99
USP28Q96RU2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP28Q96RU2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP28Q96RU2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP28Q96RU2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms