Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 KRT18P23-201ENST00000435622 1283 ntBASIC18.44■□□□□ 0.54
VPS35Q96QK1 AC104076.2-201ENST00000448912 469 ntBASIC18.44■□□□□ 0.54
VPS35Q96QK1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 AP000593.1-201ENST00000393668 712 ntBASIC18.43■□□□□ 0.54
VPS35Q96QK1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 AC140113.3-201ENST00000605663 199 ntBASIC18.43■□□□□ 0.54
VPS35Q96QK1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 AL023973.1-201ENST00000624619 620 ntBASIC18.43■□□□□ 0.54
VPS35Q96QK1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS35Q96QK1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS35Q96QK1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 RNF152P1-201ENST00000397754 604 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 AK4P3-201ENST00000418260 669 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 SEC1P-202ENST00000473944 940 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC104390.1-201ENST00000555663 520 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 AL441883.1-201ENST00000566170 1045 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 AC011558.1-201ENST00000623459 338 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 MYC-208ENST00000641036 567 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 ANO7L1-203ENST00000602586 1720 ntBASIC18.42■□□□□ 0.54
VPS35Q96QK1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS35Q96QK1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS35Q96QK1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.41■□□□□ 0.54
VPS35Q96QK1 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 DUX4L26-201ENST00000489078 1255 ntBASIC18.41■□□□□ 0.54
VPS35Q96QK1 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 GCSHP2-201ENST00000560971 527 ntBASIC18.41■□□□□ 0.54
VPS35Q96QK1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS35Q96QK1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS35Q96QK1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS35Q96QK1 AC112777.1-201ENST00000540175 1423 ntBASIC18.4■□□□□ 0.54
VPS35Q96QK1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms