Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AL136038.3-201ENST00000561909 1096 ntBASIC17.24■□□□□ 0.35
BEST3Q8N1M1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AC112497.1-201ENST00000624824 639 ntBASIC17.24■□□□□ 0.35
BEST3Q8N1M1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 TNXA-203ENST00000507684 2038 ntBASIC17.24■□□□□ 0.35
BEST3Q8N1M1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 FP475955.4-201ENST00000623131 1990 ntBASIC17.24■□□□□ 0.35
BEST3Q8N1M1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AC004408.2-201ENST00000623613 2777 ntBASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC093458.2-201ENST00000623150 629 ntBASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC116407.4-201ENST00000623319 1061 ntBASIC17.23■□□□□ 0.35
BEST3Q8N1M1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BEST3Q8N1M1 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SEC1P-202ENST00000473944 940 ntBASIC17.22■□□□□ 0.35
BEST3Q8N1M1 AC092597.1-201ENST00000487352 616 ntBASIC17.22■□□□□ 0.35
BEST3Q8N1M1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 AC093484.2-201ENST00000580996 2166 ntBASIC17.22■□□□□ 0.35
BEST3Q8N1M1 AL032819.2-201ENST00000624543 2162 ntBASIC17.22■□□□□ 0.35
BEST3Q8N1M1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
BEST3Q8N1M1 AC020763.4-201ENST00000623414 4170 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms