Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 AC093677.2-201ENST00000600169 1863 ntBASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 KRT8P32-201ENST00000512863 1461 ntBASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 PRKY-204ENST00000533551 1019 ntBASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 LINC00896-202ENST00000609602 2128 ntBASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 GUSBP6-202ENST00000438529 1198 ntBASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.47■□□□□ 0.55
NUDCD3Q8IVD9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 AC138028.4-201ENST00000564984 1845 ntBASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 NBPF21P-201ENST00000425093 1451 ntBASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.46■□□□□ 0.55
NUDCD3Q8IVD9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.54
NUDCD3Q8IVD9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.46■□□□□ 0.54
NUDCD3Q8IVD9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
NUDCD3Q8IVD9 AL357033.4-201ENST00000617703 1807 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms