Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 YBX2P1-201ENST00000394192 760 ntBASIC12.9□□□□□ -0.34
CSMD3Q7Z407 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC12.9□□□□□ -0.34
CSMD3Q7Z407 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
CSMD3Q7Z407 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC12.9□□□□□ -0.35
CSMD3Q7Z407 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.35
CSMD3Q7Z407 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AL591424.1-201ENST00000442569 1213 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 VENTXP7-201ENST00000475503 772 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 DNAJB3-202ENST00000449667 1266 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 HES2-202ENST00000377836 507 ntTSL 2 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 AC132008.2-207ENST00000454517 770 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 GUSBP12-201ENST00000513727 720 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 PPOX-214ENST00000535223 664 ntTSL 3 BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 MIR3180-4-201ENST00000582223 153 ntBASIC12.89□□□□□ -0.35
CSMD3Q7Z407 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CSMD3Q7Z407 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 Z82202.1-201ENST00000623446 1880 ntBASIC12.88□□□□□ -0.35
CSMD3Q7Z407 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CSMD3Q7Z407 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.87□□□□□ -0.35
CSMD3Q7Z407 AP005117.1-201ENST00000584346 1413 ntBASIC12.87□□□□□ -0.35
CSMD3Q7Z407 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms