Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX4Q06945 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX4Q06945 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SOX4Q06945 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX4Q06945 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.83■□□□□ 0.77
SOX4Q06945 TSPY22P-201ENST00000427496 604 ntBASIC19.83■□□□□ 0.77
SOX4Q06945 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.83■□□□□ 0.77
SOX4Q06945 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 BX276092.5-203ENST00000456199 560 ntBASIC19.83■□□□□ 0.77
SOX4Q06945 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
SOX4Q06945 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.83■□□□□ 0.77
SOX4Q06945 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.83■□□□□ 0.77
SOX4Q06945 AL121672.3-201ENST00000608644 468 ntBASIC19.83■□□□□ 0.77
SOX4Q06945 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.83■□□□□ 0.77
SOX4Q06945 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.83■□□□□ 0.76
SOX4Q06945 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SOX4Q06945 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX4Q06945 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.83■□□□□ 0.76
SOX4Q06945 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.82■□□□□ 0.76
SOX4Q06945 DUSP5P1-201ENST00000441325 1139 ntBASIC19.82■□□□□ 0.76
SOX4Q06945 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 KRT8P26-201ENST00000534154 1276 ntBASIC19.82■□□□□ 0.76
SOX4Q06945 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.82■□□□□ 0.76
SOX4Q06945 AC005332.3-201ENST00000589904 676 ntBASIC19.82■□□□□ 0.76
SOX4Q06945 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.82■□□□□ 0.76
SOX4Q06945 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 Z83836.1-201ENST00000624605 1642 ntBASIC19.82■□□□□ 0.76
SOX4Q06945 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SOX4Q06945 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX4Q06945 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX4Q06945 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.81■□□□□ 0.76
SOX4Q06945 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SOX4Q06945 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SOX4Q06945 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SOX4Q06945 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX4Q06945 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SOX4Q06945 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX4Q06945 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.81■□□□□ 0.76
SOX4Q06945 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SOX4Q06945 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.81■□□□□ 0.76
SOX4Q06945 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.81■□□□□ 0.76
SOX4Q06945 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.81■□□□□ 0.76
SOX4Q06945 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SOX4Q06945 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.81■□□□□ 0.76
SOX4Q06945 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX4Q06945 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.8■□□□□ 0.76
SOX4Q06945 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SOX4Q06945 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SOX4Q06945 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.8■□□□□ 0.76
SOX4Q06945 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SOX4Q06945 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.8■□□□□ 0.76
SOX4Q06945 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.8■□□□□ 0.76
SOX4Q06945 AP003733.1-201ENST00000491725 852 ntBASIC19.8■□□□□ 0.76
SOX4Q06945 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.8■□□□□ 0.76
SOX4Q06945 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.8■□□□□ 0.76
SOX4Q06945 CLEC4GP1-201ENST00000596555 870 ntBASIC19.8■□□□□ 0.76
SOX4Q06945 AL390719.2-201ENST00000606993 987 ntBASIC19.8■□□□□ 0.76
SOX4Q06945 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.8■□□□□ 0.76
SOX4Q06945 AC012313.10-201ENST00000623509 926 ntBASIC19.8■□□□□ 0.76
SOX4Q06945 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.8■□□□□ 0.76
SOX4Q06945 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SOX4Q06945 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms