Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HDAC4P56524 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HDAC4P56524 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HDAC4P56524 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.39■□□□□ 0.69
HDAC4P56524 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.39■□□□□ 0.69
HDAC4P56524 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 AC012306.2-201ENST00000609350 630 ntBASIC19.39■□□□□ 0.69
HDAC4P56524 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 AC112777.1-201ENST00000540175 1423 ntBASIC19.39■□□□□ 0.69
HDAC4P56524 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
HDAC4P56524 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
HDAC4P56524 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
HDAC4P56524 AC034236.2-201ENST00000606662 1610 ntBASIC19.39■□□□□ 0.69
HDAC4P56524 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
HDAC4P56524 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.39■□□□□ 0.69
HDAC4P56524 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDAC4P56524 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.38■□□□□ 0.69
HDAC4P56524 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.38■□□□□ 0.69
HDAC4P56524 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 KRT18P22-201ENST00000402024 1347 ntBASIC19.38■□□□□ 0.69
HDAC4P56524 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.38■□□□□ 0.69
HDAC4P56524 HMGA1P5-201ENST00000412453 271 ntBASIC19.38■□□□□ 0.69
HDAC4P56524 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.38■□□□□ 0.69
HDAC4P56524 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.38■□□□□ 0.69
HDAC4P56524 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.38■□□□□ 0.69
HDAC4P56524 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.38■□□□□ 0.69
HDAC4P56524 AC073592.3-201ENST00000625118 1834 ntBASIC19.38■□□□□ 0.69
HDAC4P56524 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.38■□□□□ 0.69
HDAC4P56524 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDAC4P56524 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.38■□□□□ 0.69
HDAC4P56524 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.37■□□□□ 0.69
HDAC4P56524 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HDAC4P56524 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
HDAC4P56524 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.37■□□□□ 0.69
HDAC4P56524 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.37■□□□□ 0.69
HDAC4P56524 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 AC133561.5-201ENST00000635547 218 ntBASIC19.37■□□□□ 0.69
HDAC4P56524 AC097493.4-201ENST00000641197 219 ntBASIC19.37■□□□□ 0.69
HDAC4P56524 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.37■□□□□ 0.69
HDAC4P56524 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HDAC4P56524 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDAC4P56524 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.36■□□□□ 0.69
HDAC4P56524 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.36■□□□□ 0.69
HDAC4P56524 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
HDAC4P56524 KRT8P50-201ENST00000562022 1438 ntBASIC19.36■□□□□ 0.69
HDAC4P56524 AC090164.3-201ENST00000610780 2143 ntBASIC19.36■□□□□ 0.69
HDAC4P56524 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.36■□□□□ 0.69
HDAC4P56524 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.36■□□□□ 0.69
HDAC4P56524 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HDAC4P56524 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms