Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX3P48380 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RFX3P48380 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RFX3P48380 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.47■□□□□ 0.39
RFX3P48380 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 MIR1238-201ENST00000408483 83 ntBASIC17.47■□□□□ 0.39
RFX3P48380 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.47■□□□□ 0.39
RFX3P48380 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
RFX3P48380 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
RFX3P48380 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX3P48380 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RFX3P48380 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX3P48380 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.46■□□□□ 0.39
RFX3P48380 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
RFX3P48380 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.46■□□□□ 0.39
RFX3P48380 AL596275.1-201ENST00000423464 877 ntBASIC17.46■□□□□ 0.39
RFX3P48380 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.46■□□□□ 0.39
RFX3P48380 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.46■□□□□ 0.39
RFX3P48380 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX3P48380 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX3P48380 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RFX3P48380 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RFX3P48380 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
RFX3P48380 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 CROCCP3-202ENST00000420820 1947 ntBASIC17.45■□□□□ 0.38
RFX3P48380 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 AL138781.2-201ENST00000617896 1843 ntBASIC17.45■□□□□ 0.38
RFX3P48380 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 TSPY15P-201ENST00000457163 923 ntBASIC17.45■□□□□ 0.38
RFX3P48380 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms