Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNFP41002 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCNFP41002 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNFP41002 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCNFP41002 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCNFP41002 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNFP41002 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCNFP41002 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CCNFP41002 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCNFP41002 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 AC004951.3-201ENST00000418645 1148 ntBASIC18.7■□□□□ 0.58
CCNFP41002 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.7■□□□□ 0.58
CCNFP41002 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.7■□□□□ 0.58
CCNFP41002 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.7■□□□□ 0.58
CCNFP41002 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.7■□□□□ 0.58
CCNFP41002 FSCN1P1-201ENST00000568912 1481 ntBASIC18.7■□□□□ 0.58
CCNFP41002 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNFP41002 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNFP41002 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.69■□□□□ 0.58
CCNFP41002 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCNFP41002 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
CCNFP41002 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCNFP41002 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.69■□□□□ 0.58
CCNFP41002 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.69■□□□□ 0.58
CCNFP41002 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.69■□□□□ 0.58
CCNFP41002 NUDT16P1-203ENST00000513809 620 ntBASIC18.69■□□□□ 0.58
CCNFP41002 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.69■□□□□ 0.58
CCNFP41002 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.69■□□□□ 0.58
CCNFP41002 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCNFP41002 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 KRT8P32-201ENST00000512863 1461 ntBASIC18.69■□□□□ 0.58
CCNFP41002 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCNFP41002 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCNFP41002 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.69■□□□□ 0.58
CCNFP41002 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CCNFP41002 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.68■□□□□ 0.58
CCNFP41002 AL355355.2-201ENST00000442321 338 ntBASIC18.68■□□□□ 0.58
CCNFP41002 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.68■□□□□ 0.58
CCNFP41002 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.68■□□□□ 0.58
CCNFP41002 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.68■□□□□ 0.58
CCNFP41002 MIR4785-201ENST00000585005 73 ntBASIC18.68■□□□□ 0.58
CCNFP41002 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.68■□□□□ 0.58
CCNFP41002 MIR6786-201ENST00000616843 113 ntBASIC18.68■□□□□ 0.58
CCNFP41002 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCNFP41002 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCNFP41002 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCNFP41002 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms