Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
MSX2P35548 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.75■□□□□ 0.43
MSX2P35548 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.75■□□□□ 0.43
MSX2P35548 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.75■□□□□ 0.43
MSX2P35548 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.75■□□□□ 0.43
MSX2P35548 MIR6821-201ENST00000617625 74 ntBASIC17.75■□□□□ 0.43
MSX2P35548 TNRC18P3-201ENST00000441896 2691 ntBASIC17.75■□□□□ 0.43
MSX2P35548 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
MSX2P35548 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSX2P35548 PP12613-201ENST00000424958 2230 ntBASIC17.75■□□□□ 0.43
MSX2P35548 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
MSX2P35548 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
MSX2P35548 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.74■□□□□ 0.43
MSX2P35548 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.74■□□□□ 0.43
MSX2P35548 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.74■□□□□ 0.43
MSX2P35548 AC105036.2-201ENST00000569468 176 ntBASIC17.74■□□□□ 0.43
MSX2P35548 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.74■□□□□ 0.43
MSX2P35548 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
MSX2P35548 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX2P35548 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
MSX2P35548 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX2P35548 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
MSX2P35548 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
MSX2P35548 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.73■□□□□ 0.43
MSX2P35548 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.73■□□□□ 0.43
MSX2P35548 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 RAP2CP1-201ENST00000605103 478 ntBASIC17.73■□□□□ 0.43
MSX2P35548 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.73■□□□□ 0.43
MSX2P35548 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
MSX2P35548 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.73■□□□□ 0.43
MSX2P35548 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MSX2P35548 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
MSX2P35548 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSX2P35548 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MSX2P35548 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
MSX2P35548 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 AC124067.4-201ENST00000519691 2379 ntBASIC17.72■□□□□ 0.43
MSX2P35548 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
MSX2P35548 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.72■□□□□ 0.43
MSX2P35548 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
MSX2P35548 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSX2P35548 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSX2P35548 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.71■□□□□ 0.43
MSX2P35548 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.71■□□□□ 0.43
MSX2P35548 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms