Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC24.28■■□□□ 1.48
RXRBP28702 MRPL20P1-201ENST00000400819 433 ntBASIC24.28■■□□□ 1.48
RXRBP28702 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
RXRBP28702 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC24.28■■□□□ 1.48
RXRBP28702 AL138831.2-201ENST00000606564 490 ntBASIC24.28■■□□□ 1.48
RXRBP28702 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 CYP51A1P1-201ENST00000492267 1507 ntBASIC24.28■■□□□ 1.48
RXRBP28702 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
RXRBP28702 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC24.27■■□□□ 1.48
RXRBP28702 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC24.27■■□□□ 1.48
RXRBP28702 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 TCAP-202ENST00000578283 583 ntTSL 5 BASIC24.27■■□□□ 1.48
RXRBP28702 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC24.27■■□□□ 1.48
RXRBP28702 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.27■■□□□ 1.48
RXRBP28702 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RXRBP28702 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC24.27■■□□□ 1.48
RXRBP28702 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
RXRBP28702 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC24.26■■□□□ 1.47
RXRBP28702 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC24.26■■□□□ 1.47
RXRBP28702 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC24.26■■□□□ 1.47
RXRBP28702 AP000344.2-201ENST00000512987 629 ntBASIC24.26■■□□□ 1.47
RXRBP28702 AC087641.1-201ENST00000557561 1021 ntBASIC24.26■■□□□ 1.47
RXRBP28702 CYGB-205ENST00000590175 830 ntTSL 3 BASIC24.26■■□□□ 1.47
RXRBP28702 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC24.26■■□□□ 1.47
RXRBP28702 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
RXRBP28702 FEM1AP4-201ENST00000443167 1987 ntBASIC24.25■■□□□ 1.47
RXRBP28702 AC133561.1-201ENST00000568600 2415 ntBASIC24.25■■□□□ 1.47
RXRBP28702 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
RXRBP28702 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC24.25■■□□□ 1.47
RXRBP28702 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RXRBP28702 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 SOD2-201ENST00000337404 991 ntTSL 2 BASIC24.25■■□□□ 1.47
RXRBP28702 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 HLA-DRB6-201ENST00000411500 1235 ntBASIC24.25■■□□□ 1.47
RXRBP28702 KRT18P27-201ENST00000427733 1299 ntBASIC24.25■■□□□ 1.47
RXRBP28702 AC068472.1-201ENST00000474589 881 ntBASIC24.25■■□□□ 1.47
RXRBP28702 RNA5SP421-201ENST00000516864 134 ntBASIC24.25■■□□□ 1.47
RXRBP28702 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC24.25■■□□□ 1.47
RXRBP28702 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC24.25■■□□□ 1.47
RXRBP28702 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC24.25■■□□□ 1.47
RXRBP28702 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC24.25■■□□□ 1.47
RXRBP28702 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RXRBP28702 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
RXRBP28702 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RXRBP28702 METTL26-205ENST00000397666 726 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC24.24■■□□□ 1.47
RXRBP28702 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC24.24■■□□□ 1.47
RXRBP28702 MEIS3P1-201ENST00000495167 958 ntBASIC24.24■■□□□ 1.47
RXRBP28702 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RXRBP28702 TK1-204ENST00000590430 683 ntTSL 3 BASIC24.24■■□□□ 1.47
RXRBP28702 AL359881.2-201ENST00000602973 570 ntBASIC24.24■■□□□ 1.47
RXRBP28702 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RXRBP28702 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RXRBP28702 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RXRBP28702 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
RXRBP28702 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
RXRBP28702 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC24.24■■□□□ 1.47
RXRBP28702 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.23■■□□□ 1.47
RXRBP28702 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC24.23■■□□□ 1.47
RXRBP28702 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
RXRBP28702 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
RXRBP28702 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC24.23■■□□□ 1.47
RXRBP28702 ETFA-208ENST00000559602 792 ntTSL 3 BASIC24.23■■□□□ 1.47
RXRBP28702 AC025678.2-201ENST00000562061 970 ntBASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms