Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.63■□□□□ 0.57
SHOX2O60902 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SHOX2O60902 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SHOX2O60902 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.62■□□□□ 0.57
SHOX2O60902 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.62■□□□□ 0.57
SHOX2O60902 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.62■□□□□ 0.57
SHOX2O60902 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.62■□□□□ 0.57
SHOX2O60902 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 UBE2DNL-204ENST00000602536 740 ntBASIC18.62■□□□□ 0.57
SHOX2O60902 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SHOX2O60902 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SHOX2O60902 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.62■□□□□ 0.57
SHOX2O60902 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
SHOX2O60902 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.62■□□□□ 0.57
SHOX2O60902 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHOX2O60902 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
SHOX2O60902 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 AGGF1P2-201ENST00000426656 2106 ntBASIC18.61■□□□□ 0.57
SHOX2O60902 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 AL096828.2-201ENST00000567259 1965 ntBASIC18.61■□□□□ 0.57
SHOX2O60902 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.61■□□□□ 0.57
SHOX2O60902 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHOX2O60902 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.61■□□□□ 0.57
SHOX2O60902 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 C2orf69P4-201ENST00000565394 541 ntBASIC18.61■□□□□ 0.57
SHOX2O60902 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.61■□□□□ 0.57
SHOX2O60902 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.61■□□□□ 0.57
SHOX2O60902 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.61■□□□□ 0.57
SHOX2O60902 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.61■□□□□ 0.57
SHOX2O60902 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHOX2O60902 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHOX2O60902 FLJ38576-201ENST00000623820 2459 ntBASIC18.61■□□□□ 0.57
SHOX2O60902 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHOX2O60902 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
SHOX2O60902 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 ZNRF2P3-201ENST00000424200 374 ntBASIC18.6■□□□□ 0.57
SHOX2O60902 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.6■□□□□ 0.57
SHOX2O60902 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.6■□□□□ 0.57
SHOX2O60902 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.6■□□□□ 0.57
SHOX2O60902 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.6■□□□□ 0.57
SHOX2O60902 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SHOX2O60902 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHOX2O60902 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.6■□□□□ 0.57
SHOX2O60902 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.6■□□□□ 0.57
SHOX2O60902 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.59■□□□□ 0.57
SHOX2O60902 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.59■□□□□ 0.57
SHOX2O60902 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHOX2O60902 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SHOX2O60902 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHOX2O60902 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHOX2O60902 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHOX2O60902 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHOX2O60902 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHOX2O60902 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms