Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 NIFKP9-201ENST00000419265 221 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 AL390955.1-201ENST00000428694 934 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.35■□□□□ 0.21
LMX1BO60663 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.35■□□□□ 0.21
LMX1BO60663 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 NOC2LP1-202ENST00000452600 2235 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 KRT8P11-201ENST00000409686 1436 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LMX1BO60663 MTMR9LP-203ENST00000426597 1545 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LMX1BO60663 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 TERF1P1-201ENST00000311003 1181 ntBASIC16.34■□□□□ 0.21
LMX1BO60663 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.34■□□□□ 0.21
LMX1BO60663 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.34■□□□□ 0.21
LMX1BO60663 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.34■□□□□ 0.21
LMX1BO60663 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
LMX1BO60663 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
LMX1BO60663 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 CYP2D8P-201ENST00000433633 1490 ntBASIC16.34■□□□□ 0.21
LMX1BO60663 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LMX1BO60663 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LMX1BO60663 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.34■□□□□ 0.21
LMX1BO60663 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LMX1BO60663 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LMX1BO60663 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 SLC25A3P1-201ENST00000443844 931 ntBASIC16.33■□□□□ 0.2
LMX1BO60663 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
LMX1BO60663 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 AC010947.1-201ENST00000623454 693 ntBASIC16.33■□□□□ 0.2
LMX1BO60663 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.33■□□□□ 0.2
LMX1BO60663 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms